Toughening up the oysters of the Bay

Oysters are benthic filter feeders important to coastal environments all over the world. In the Chesapeake Bay, the eastern oyster (Crassostrea virginica) is our only native oyster species and helps keep the ecosystems of the Bay healthy. Fixed to the spot they settled on as larvae, oysters filter the water when they feed and breathe; they build reef structures that provide habitat and safe haven for critters hiding from predators. The eastern oyster also supports a healthy and growing aquaculture industry that brings oysters to our plates.

Most oyster farmers use the waterways where oysters naturally occur to grow their own oysters for human consumption. This makes sense, of course; if oysters can survive there naturally, it’s highly likely they can be cultivated there. However, these waterways are changing, and their suitability for growing oysters is also changing. While the oyster is accustomed to environments that fluctuate on a wide variety of time scales, from daily changes occurring with incoming and outgoing tides to seasonal cycles of temperature, salinity, and food availability, everyone has their limits. The fact that an organism designed to cope with changing environments is having trouble tolerating the changes we’ve induced in our planet is alarming.

Eastern oyster seed (juvenile oysters)

So what are we going to do about it?

In the near term, we need solutions to help oysters survive in these conditions. Scientists have developed some amazing techniques for mitigating the uncertainty of the environment by finding creative ways to use principles like natural selection. In nature, those equipped for the stress of their environment survive to pass their genes on to the next generation. In an aquaculture setting, scientists simply make this decision. They select oysters that survive in certain conditions, like low-salinity, or have genetic markers that tell us they’re resistant to certain diseases. They breed these oysters so that their offspring are more likely to survive these conditions than by natural selection alone. This technique is highly effective but slow, as it takes generations to create these lines. My work has been focused on testing a new technique that focuses within a generation of oysters.

Stress conditioning

Stress conditioning is the idea that when we expose an organism to a stressor, they make molecular changes that prepare them for that stressor in the future. One stress I’ve conducted work for has been salinity stress. Oysters prefer a salinity range 5-35 ppt; in the Chesapeake Bay, we are on the lower end of that range, so drops in salinity due to increased rainfall or extreme weather events can push salinity dangerously low. The most severe account of this in the last decade was in 2019, but in 2024 we also had unseasonably fresh water in the Bay. So what would happen if we exposed oysters to a short burst of low salinity? Would they be more likely to survive during a long exposure to low salinity? These are some of the questions I’m looking to answer with my research.

Controlled experiments on the eastern oyster

In controlled experiments, we did see less mortality in our juvenile oysters that were stress-conditioned, and increased growth compared to oysters that were not stress-conditioned but exposed to a long period of low salinity stress. The next steps for this work were to test it out in the field, where other things like temperature, food availability, and dissolved oxygen availability are less controlled. We selected three sites along the Choptank River to deploy our stress-conditioned oysters. One on the mainstem of the river, where the salinity is well within the oyster’s comfort zone. A second site on a tributary upstream, where the salinity begins to drop, and a third site further upstream at Suicide Bridge, where the salinity is low.

Putting oyster cages out in the field!

Over the course of six months, we’ll go out to check on these oysters periodically. We’ll assess how many have survived the conditions and if the conditions have affected how well they grow. As we collect more data, I’ll have a better idea of how helpful stress conditioning for low salinity is for our oysters. From there, we can consider if this technique is something oyster farmers should use to help toughen up their oysters in the face of variable conditions.

Resources, Resources, Resources

This is a list of resources I’ve found over the years searching for jobs, funding, and graduate positions. I also added a science Twitter section (such a great place to find opportunities!) if you want to start a science Twitter but are unsure of where to start.

This is a living document so please send me resources you believe I should add, and let me know if you come across any dead links: Contact me

General (Grad School, Science, Job Hunting, etc.):

Academic Influence: academicinfluence.com 

  • Information on stipends and graduate life per University

ResearchGate: researchgate.net

  • Nerdy social networking site. Find researchers you’re interested in and follow their work. Get notifications when they publish new things. Send messages etc. 

Semantic Scholar: semanticscholar.org

  • AI-powered research tool that generates reading recommendations based on your interests and what you save in your library.

Pathways to Science: https://pathwaystoscience.org/index.aspx

  • Job boards with funding opportunities, webinars on applying to graduate school, etc. 

ScienceDaily: https://www.sciencedaily.com/

  • News-style articles about new and exciting scientific discoveries

Science Twitter: 

NOAA Sea Grant: @SeaGrant

  • Great place to start! 

MD SeaGrant: @MDSeaGrant

  • Self-explanatory

Marine Graduate Opportunities: @mar_opps

  • This account retweets anything tagged #maropps great way to see a wide range of opportunities 

Daily R Cheatsheets: @daily_r_sheets

  • Fun and helpful

MEES Graduate Student Organization: @meesgso

  • UMD group that posts updates but also job and fellowship opportunities related to Marine Estuarine and Environmental Science

Dr. Zofia Beck Anchondo: @zofiology 

  • This woman does a lot of science art that she sells. 

CERF Science: @CERFScience 

  • Coastal Estuarine Research Federation

ISSP: @ISSP_Org

  • International Society of Sustainability Professionals

Freshwater Science: @BenthosNews

  • Society for Freshwater Science 

Duke Marine Lab UAS: @MarineUAS

  • Marine robotics and remote sensing lab 

CBL Outreach: @CBLOutreach

  • Chesapeake Biological Lab 

Matt Gray: @MattWGray

  • Matt is very active on Twitter and retweets a lot of oyster-focused opportunities 

Dr David Shiffman: @WhySharksMatter

  • David is a very entertaining science Twitter staple in my opinion! He’s a research scientist, science communicator, and environmental consultant. 

Nature: @Nature

  • Research news and commentary from the journal Nature 

National Geographic: @NatGeo

  • Self-explanatory

Science News: @ScienceNews

  • Latest news in all fields of science

Tip for getting started: Whenever I want to find more accounts to follow I find an account I really like and look at who is following them and who they’re following. Sends you down a fun science Twitter rabbit hole 

Fellowships/Scholarships: 

NSF Graduate Research Fellowship Program: https://www.nsfgrfp.org/

Lewis and Clark Fund for Exploration and Field Science: https://www.amphilsoc.org/grants/lewis-and-clark-fund-exploration-and-field-research

AAUW Grants and Scholarships: https://www.aauw.org/resources/programs/fellowships-grants/current-opportunities/

Listservs: 

Coral List: https://coral.aoml.noaa.gov/mailman/listinfo/coral-list

  • Pretty active listserv where people chat about and share opportunities about research on corals 

ECOLOG: https://community.esa.org/group.htm?mode=home&igid=35455&elon=1

  • VERY active listserv, I probably get at least 10 emails a day from the ECOLOG with everything from job/school opportunities, upcoming conferences, and online courses to research surveys, and general questions. (you can mess with the settings so you don’t get so many emails on the daily) 

Job Boards: Some of these boards might also have grad opportunities 

NOAA Student Opportunities: https://www.noaa.gov/education/opportunities/students

American Geophysical Union Job Board: https://findajob.agu.org/jobs/

Association for Sciences of Limnology and Oceanography Job Board: https://aslo.users.membersuite.com/community/career-center/browse-jobs/allJobs/allCities/allStates

Diversity in Research: https://www.diversityinresearch.careers/

Ocean Carbon and Biogeochemistry: https://www.us-ocb.org/science-support/student-opportunities/

Texas A&M Natural Resources Jobs Board: https://wfscjobs.tamu.edu/employment-links/

The Society for Integrative and Comparative Biology: https://sicb.org/jobs-and-fellowships/page/2/

Schmidt Marine Job Board: https://jobs.schmidtmarine.org/jobs?page=6

Ocean Opportunities: https://www.oceanoculus.com/news-from-the-sea/tiny-ocean-opportunites

International Union for the Conservation of Nature: https://hrms.iucn.org/iresy/index.cfm?event=vac.showOpenList

Marine Advanced Technology Education Center: https://www.marinetech.org/other-internships/

American Fisheries Society Job Board: https://jobs.fisheries.org/

World Aquaculture Society Job Board: https://www.was.org/WasEs/Job/List?page=5

University of British Columbia Job Board: https://oceans.ubc.ca/about/join-us/join-them/

Wise Oceans Job Board: https://www.wiseoceans.com/jobs/

Google Sheets: 

PIs recruiting students for Fall 2023

ecoevojobs.net 2022-23

Early Career Funding, Awards, and Other Funding

Lists of resources: 

Science’s Careers section: https://www.science.org/careers

Academic Jobs Wiki: https://academicjobs.fandom.com/wiki/Academic_Jobs_Wiki

Aerin Jacob’s lab Funding page: http://www.aerinjacob.ca/funding–awards.html

John Bruno’s prospective student’s page: https://johnfbruno.web.unc.edu/2016/09/23/prospective-graduate-students/

The Baskett Lab funding page: http://www.des.ucdavis.edu/faculty/baskett/links/academia.html#Grad

Early Career Researchers Central: https://ecrcentral.org/fundings

Marine Conservation Institute: https://marine-conservation.org/career-resources/

Eckerd College LibGuide on Funding Scholarships and Grants: https://libguides.eckerd.edu/c.php?g=527992&p=3852396

SevenSeas Media: https://sevenseasmedia.org/

  • Highly recommend their newsletter! Biweekly (I believe) email that includes upcoming ocean science webinars, funding opportunities and a very well maintained job board

Courses: 

My environmental DNA Research: Detecting River Herring Using the Water they Swim through

Research Focus (ABT):

River herring are an important migratory species that travel in and out of coastal bays and their associated rivers at different stages in their life cycle. These fish were once so abundant they would migrate inland up and down the coast of North America in billions. This massive migration was an important resource to humans tracing back thousands of years, additionally, these fish also provide numerous ecosystem services to riparian, estuarine, and ocean environments.

However, overfishing, habitat loss, and declining water quality have caused severe reductions in their populations to the point where they are no longer able to support large-scale fishing efforts. As an anadromous species, population monitoring is recommended on a per river basis but continuous monitoring of every river where these fish occur is unrealistic for management agencies with limited resources.

Therefore we employ a quicker, cheaper, and less labor-intensive methodology based on the premise that fish shed DNA in the form of scales, feces, and mucus into their environment, and that we can measure this environmental DNA (eDNA) in the water using highly sensitive molecular tools. Using a local population of river herring, we measured the amount of river herring eDNA present in water samples on a daily basis throughout the 2021 river herring spawning run. We compared our eDNA results to fish count data taken during the same season to evaluate the effectiveness of eDNA monitoring tools on river herring populations.

 

A Crabby Hero Born: The USM COVID-19 PSA Competition

In January of 2020 I received an email from my University, The University System of Maryland, presenting a Public Service Announcement Competition. The competition sought to gather a slough of creative messages for fighting pandemic fatigue and encourage people to get vaccinated.

I developed a comic strip story about a little heroic blue swimmer crab who learned of a strange human virus that sent people hiding indoors. Distraught that his beloved Marylanders would be trapped inside for the summer once again, the Vaccination Crustacean was called to action!

I submitted my comic and much to my delight it was selected as one of the six winners of the competition.

There are eight crabby puns in the comic, and better yet, there are ten suggestions for slowing the spread of COVID-19! Can you spot them all?? Click on each image below to get a closer look:

As we begin to enter into a potential new phase of masks and quarantines, the messages the vaccination crustacean has to share are vital to slowing the spread of this virus.

https://platform.twitter.com/widgets.js

I received a nice tweet of appreciation from the President of my University, Peter Goodwin at the University of Maryland Center for Environmental Science.